The bacterium Xanthomonas citri activates parts of the ripening programme in the infected leaves of its host plant, which normally causes the fruit to become soft and sweet. This allows it to use the released sugar as food and grow up to a hundred times faster. An international research team led by the University of Tübingen and with the help of scientists at Martin Luther University Halle-Wittenberg (MLU) has discovered exactly how this process works in detail. The results were published in “Science” and provide new approaches for combating citrus canker that is caused by X. citri.

In the cultivation of citrus fruits such as lemons, oranges, and mandarins, citrus canker is one of the most economically significant plant diseases. Infection with Xanthomonas citri causes brown spots and fluid-filled pustules to appear on the affected leaves and fruits of citrus plants, resembling small ulcers – hence the name citrus canker. The plants lose the infected leaves and fruit prematurely, resulting in significant yield losses. “It was known that many pathogens – including Xanthomonas bacteria – target the sugars bound up in the plant cell wall,” explains Dr. Trang Phan from the Center for Plant Molecular Biology at the University of Tübingen, the first author of the study. “We were interested in the tricks these tiny bacteria use to extract nutrients from the plant's cell walls, because these walls represent an almost insurmountable protective barrier for many pathogens.”

A small investment with big results

“The bacterium Xanthomonas citri uses a syringe-like protein complex to inject various effector proteins into plant cells. These bacterial proteins specifically manipulate cellular processes in host cells to promote infection,” says the study’s lead author Professor Thomas Lahaye from the University of Tübingen. “We investigated a particularly important effector protein that travels along the host’s internal transport highways to enter the cell nucleus – the control center of the host cell – in order to understand how it promotes infection there.” Once inside the nucleus, the bacterial effector activates the production of a plant regulator that switches on a ripening program whose components are normally produced only in fruits. Because the bacterium forces the host to run this fruit-specific ripening program in leaves, cell wall-bound sugars are released directly into the area where the bacteria grow – a clear nutritional advantage that accelerates bacterial growth," says Lahaye.

Trang Phan and co-author PD Dr Jan Grau from the Institute of Computer Science at MLU jointly evaluated the extensive project data, especially the sequencing datasets, using bioinformatics. A comparison of the genes activated in infected citrus leaves (native program) and in ripening fruit (hijacked program) revealed striking similarities between the two gene sets. These parallels showed that the program triggered by the bacterium in leaves essentially mimics the natural fruit-ripening program. Building on this insight, the team showed that the citrus control protein – and its tomato counterpart – activate similarly structured ripening programs in both tomato and citrus fruits. “By producing effector proteins that reprogram the host's developmental processes to their advantage, the bacteria are able to utilize large amounts of cell wall-bound sugars with little effort,” explains Trang Phan. 

Practical tips for growing citrus

These detailed insights into both the course of infection of citrus plants by Xanthomonas citri and the regulation of fruit ripening provide the research team with new leads for developing pest-resistant plants. “While our research aimed to clarify how the pathogen manipulates the host, we also gained new insights into how plants orchestrate fruit ripening. This knowledge could now serve as a basis for using standard genetic modification methods to fine-tune the ripening process. In the future, our findings could help to adjust both the firmness and sweetness of tomatoes and citrus fruits,” says Lahaye.

Study: Phan T. T. et al. Xanthomonas coordinates type III–type II effector synergy by activating fruit ripening pathway. Science (2025) doi: 10.1126/science.adz9239

Studie: Phan T. T. et al. Xanthomonas coordinates type III–type II effector synergy by activating fruit ripening pathway. Science (2025) doi: doi.org/10.1126/science.adz9239